../
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BAFfromClusterMeans.Rd
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2.7 kiB
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BAFfromGenotypes.Rd
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3.9 kiB
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GWASTools-package.Rd
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2.5 kiB
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GWASTools.pdf
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366.4 kiB
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GenotypeData-class.Rd
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8.5 kiB
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HLA.Rd
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793 B
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IntensityData-class.Rd
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9.8 kiB
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MatrixGenotypeReader-class.Rd
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5.0 kiB
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NcdfGenotypeReader-class.Rd
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5.5 kiB
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NcdfIntensityReader-class.Rd
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7.5 kiB
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NcdfReader-class.Rd
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3.9 kiB
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ScanAnnotationDataFrame-class.Rd
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4.8 kiB
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ScanAnnotationSQLite-class.Rd
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5.5 kiB
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SnpAnnotationDataFrame-class.Rd
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6.2 kiB
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SnpAnnotationSQLite-class.Rd
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6.9 kiB
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alleleFrequency.Rd
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1.3 kiB
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allequal.Rd
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1.3 kiB
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anomDetectBAF.Rd
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12.0 kiB
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anomDetectLOH.Rd
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12.9 kiB
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anomIdentifyLowQuality.Rd
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6.4 kiB
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anomSegStats.Rd
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11.6 kiB
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apartSnpSelection.Rd
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2.4 kiB
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assocTestCPH.Rd
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7.9 kiB
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assocTestRegression.Rd
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20.0 kiB
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batchTest.Rd
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5.5 kiB
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centromeres.Rd
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915 B
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chromIntensityPlot.Rd
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3.6 kiB
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convertNcdfGds.Rd
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2.4 kiB
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duplicateDiscordance.Rd
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2.0 kiB
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duplicateDiscordanceAcrossDatasets.Rd
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3.2 kiB
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duplicateDiscordanceProbability.Rd
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1.8 kiB
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findBAFvariance.Rd
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6.6 kiB
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genoClusterPlot.Rd
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3.2 kiB
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getVariable.Rd
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3.6 kiB
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getobj.Rd
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646 B
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gwasExactHW.Rd
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4.9 kiB
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hetByScanChrom.Rd
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1.9 kiB
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hetBySnpSex.Rd
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2.0 kiB
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ibdPlot.Rd
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4.2 kiB
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intensityOutliersPlot.Rd
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2.6 kiB
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manhattanPlot.Rd
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2.1 kiB
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meanIntensityByScanChrom.Rd
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2.2 kiB
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mendelErr.Rd
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5.9 kiB
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mendelList.Rd
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2.4 kiB
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missingGenotypeByScanChrom.Rd
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1.8 kiB
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missingGenotypeBySnpSex.Rd
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1.8 kiB
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ncdfAddData.Rd
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15.0 kiB
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ncdfCreate.Rd
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2.3 kiB
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ncdfSubset.Rd
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1.7 kiB
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pedigreeCheck.Rd
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2.9 kiB
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pedigreeClean.Rd
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3.2 kiB
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pedigreeFindDuplicates.Rd
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2.6 kiB
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pedigreePairwiseRelatedness.Rd
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3.6 kiB
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pseudoautoIntensityPlot.Rd
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2.1 kiB
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pseudoautosomal.Rd
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957 B
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qqPlot.Rd
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1.2 kiB
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qualityScoreByScan.Rd
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1.8 kiB
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qualityScoreBySnp.Rd
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1.6 kiB
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readWriteFirst.Rd
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659 B
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relationsMeanVar.Rd
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2.0 kiB
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saveas.Rd
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772 B
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simulateGenotypeMatrix.Rd
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2.9 kiB
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simulateIntensityMatrix.Rd
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3.2 kiB
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snpCorrelationPlot.Rd
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1.7 kiB
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